Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2174002.1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
| KAK2174003.1 | TRANSLOCATION ASSOCIATED MEMBRANE PROTEIN |
| KAK2174004.1 | |
| KAK2173990.1 | ZGC:162816-RELATED |
| KAK2173991.1 | |
| KAK2173992.1 | |
| KAK2173993.1 | |
| KAK2173994.1 | |
| KAK2173995.1 | UNCHARACTERIZED |
| KAK2173970.1 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
| KAK2173971.1 | AMINO ACID TRANSPORTER |
| KAK2173972.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| KAK2173973.1 | ZINC FINGER PROTEIN |
| KAK2173974.1 | IP01015P-RELATED |
| KAK2173975.1 | |
| KAK2173976.1 | IP01015P-RELATED |
| KAK2173977.1 | BUCENTAUR RELATED |
| KAK2173978.1 | REVERSE TRANSCRIPTASES |
| KAK2173979.1 | PROTEIN CBG26694 |
| KAK2173980.1 | |
| KAK2173981.1 | |
| KAK2173982.1 | |
| KAK2173983.1 | |
| KAK2173984.1 | |
| KAK2173985.1 | |
| KAK2173986.1 | |
| KAK2173987.1 | |
| KAK2173988.1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| KAK2173989.1 | |
| KAK2173961.1 | |
| KAK2173962.1 | |
| KAK2173963.1 | METHANETHIOL OXIDASE |
| KAK2173964.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2173965.1 | - |
| KAK2173966.1 | PROMININ PROM PROTEIN |
| KAK2173967.1 | |
| KAK2173968.1 | |
| KAK2173969.1 | MYOSUPPRESSIN RECEPTOR 1, ISOFORM B-RELATED |
| KAK2173954.1 | |
| KAK2173955.1 | |
| KAK2173956.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2173957.1 | SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED |
| KAK2173958.1 | ADIPOR/PROGESTIN RECEPTOR-RELATED |
| KAK2173959.1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| KAK2173960.1 | |
| KAK2173929.1 | |
| KAK2173930.1 | HIGH MOBILITY GROUP PROTEIN 2 |
| KAK2173931.1 | HOMEOBOX PROTEIN NKX |
| KAK2173932.1 | SPORE COAT PROTEIN SP85 |
| KAK2173933.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
