Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2174243.1 | NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-A SUBUNIT |
| KAK2174244.1 | 37S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL |
| KAK2174245.1 | MUCIN 4-RELATED |
| KAK2174246.1 | |
| KAK2174247.1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
| KAK2174248.1 | |
| KAK2174249.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2174250.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2174251.1 | |
| KAK2174252.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2174253.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| KAK2174211.1 | |
| KAK2174212.1 | POLY [ADP-RIBOSE] POLYMERASE |
| KAK2174213.1 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB |
| KAK2174214.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2174215.1 | POLY [ADP-RIBOSE] POLYMERASE |
| KAK2174216.1 | RUN AND SH3 DOMAIN CONTAINING |
| KAK2174217.1 | |
| KAK2174218.1 | |
| KAK2174219.1 | |
| KAK2174220.1 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
| KAK2174221.1 | |
| KAK2174222.1 | PROTEIN PHOSPHATASE INHIBITOR |
| KAK2174223.1 | DEUBIQUITINATING PROTEIN VCIP135 |
| KAK2174224.1 | DEUBIQUITINATING PROTEIN VCIP135 |
| KAK2174225.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| KAK2174226.1 | |
| KAK2174227.1 | |
| KAK2174228.1 | |
| KAK2174229.1 | HEME OXYGENASE |
| KAK2174230.1 | PEPTIDYLPROLYL ISOMERASE |
| KAK2174231.1 | |
| KAK2174232.1 | |
| KAK2174233.1 | IP01015P-RELATED |
| KAK2174234.1 | ADAPTER PROTEIN CIKS |
| KAK2174235.1 | |
| KAK2174236.1 | |
| KAK2174237.1 | SERINE PROTEASE-RELATED |
| KAK2174189.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| KAK2174190.1 | TUBULIN POLYGLUTAMYLASE |
| KAK2174191.1 | |
| KAK2174192.1 | UNCHARACTERIZED |
| KAK2174193.1 | MATRIN 3/NUCLEAR PROTEIN 220-RELATED |
| KAK2174194.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2174195.1 | |
| KAK2174196.1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
| KAK2174197.1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
| KAK2174198.1 | |
| KAK2174199.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2174200.1 |
