Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2174302.1 | |
| KAK2174303.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| KAK2174304.1 | |
| KAK2174305.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2174306.1 | |
| KAK2174307.1 | |
| KAK2174308.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| KAK2174309.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2174310.1 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| KAK2174311.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2174312.1 | |
| KAK2174313.1 | |
| KAK2174280.1 | METALLOPROTEASE |
| KAK2174281.1 | |
| KAK2174282.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
| KAK2174283.1 | DNA-DIRECTED RNA POLYMERASE |
| KAK2174284.1 | ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 |
| KAK2174285.1 | ZINC FINGER, ZZ DOMAIN CONTAINING 3 |
| KAK2174286.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| KAK2174270.1 | D-ERYTHRULOSE REDUCTASE |
| KAK2174271.1 | BBSOME-INTERACTING PROTEIN 1 |
| KAK2174272.1 | HOMEOBOX PROTEIN MSX |
| KAK2174273.1 | GALACTOSIDE 2-L-FUCOSYLTRANSFERASE |
| KAK2174274.1 | |
| KAK2174275.1 | |
| KAK2174276.1 | HOMEOBOX PROTEIN MSX |
| KAK2174277.1 | |
| KAK2174278.1 | NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED |
| KAK2174279.1 | |
| KAK2174254.1 | |
| KAK2174255.1 | |
| KAK2174256.1 | CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN |
| KAK2174257.1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| KAK2174258.1 | |
| KAK2174259.1 | BETA-1,4-GALACTOSYLTRANSFERASE |
| KAK2174260.1 | ARGININOSUCCINATE SYNTHASE |
| KAK2174261.1 | ARGININOSUCCINATE SYNTHASE |
| KAK2174262.1 | |
| KAK2174263.1 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
| KAK2174264.1 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
| KAK2174265.1 | LARGE PROLINE-RICH PROTEIN BAG6 |
| KAK2174266.1 | ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 |
| KAK2174267.1 | |
| KAK2174268.1 | |
| KAK2174269.1 | NFRKB-RELATED |
| KAK2174238.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2174239.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2174240.1 | |
| KAK2174241.1 | G-PROTEIN COUPLED RECEPTOR |
| KAK2174242.1 |
