About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG16794.1
RPACG16795.1
RPACG16796.1
RPACG16797.1
RPACG16798.1PHOSPHATIDYLINOSITOL TRANSFER PROTEIN
RPACG16799.1
RPACG16800.1COLLAGEN ALPHA
RPACG16801.1UNCHARACTERIZED
RPACG16802.1
RPACG16803.1COLLAGEN ALPHA
RPACG16804.1CUBILIN-LIKE PROTEIN
RPACG16805.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27
RPACG16806.1UNCHARACTERIZED
RPACG16807.1LEUCINE ZIPPER PROTEIN 4-RELATED
RPACG16808.1
RPACG16809.1
RPACG16810.1
RPACG16811.1SNF2/RAD54 HELICASE FAMILY
RPACG16812.1
RPACG16812.2
RPACG16813.1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
RPACG16814.1
RPACG16815.1
RPACG16816.1
RPACG16816.2
RPACG16817.1
RPACG16818.1
RPACG16819.1
RPACG16820.1
RPACG16821.1
RPACG16822.1
RPACG16823.1
RPACG16823.2
RPACG16824.1
RPACG16825.1
RPACG16826.1
RPACG16827.1
RPACG16828.1FTP DOMAIN-CONTAINING PROTEIN
RPACG16829.1MYOSIN VII, XV
RPACG16830.1
RPACG16831.1
RPACG16832.1PROTEIN IWS1 HOMOLOG
RPACG16833.1INTRAFLAGELLAR TRANSPORT PROTEIN 81 HOMOLOG
RPACG16834.1-
RPACG16835.1-
RPACG16836.1PERIAXIN-LIKE
RPACG16836.2
RPACG16836.3
RPACG16836.4
RPACG16837.1MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT
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