About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG16613.1-
RPACG16614.1-
RPACG16615.1UNCHARACTERIZED
RPACG16616.1THO COMPLEX SUBUNIT 3 THO3
RPACG16617.1FIBROBLAST GROWTH FACTOR RECEPTOR
RPACG16618.1PROTEIN CBG17025
RPACG16619.1
RPACG16620.1
RPACG16621.1POLYCYSTIN FAMILY MEMBER
RPACG16622.1
RPACG16622.2
RPACG16622.3
RPACG16622.4
RPACG16623.1ADP-RIBOSYLGLYCOHYDROLASE
RPACG16624.1ADP-RIBOSYLGLYCOHYDROLASE
RPACG16625.1ADP-RIBOSYLGLYCOHYDROLASE
RPACG16626.1ADP-RIBOSYLGLYCOHYDROLASE
RPACG16627.1
RPACG16628.1ADP-RIBOSYLGLYCOHYDROLASE
RPACG16629.1ADP-RIBOSYLGLYCOHYDROLASE
RPACG16630.1ADP-RIBOSYLGLYCOHYDROLASE
RPACG16631.1ADP-RIBOSYLGLYCOHYDROLASE
RPACG16632.1TYROSINE-PROTEIN KINASE RECEPTOR
RPACG16633.1
RPACG16634.1
RPACG16635.1
RPACG16636.1
RPACG16637.1
RPACG16638.1CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR
RPACG16639.1
RPACG16640.1
RPACG16641.1GLUTAMINE SYNTHETASE
RPACG16642.1WSCD FAMILY MEMBER CG9164
RPACG16642.2
RPACG16643.1
RPACG16644.1WSCD FAMILY MEMBER CG9164
RPACG16645.1
RPACG16646.1
RPACG16647.1
RPACG16648.1
RPACG16649.1ANILLIN/RHOTEKIN RTKN
RPACG16650.1PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
RPACG16650.2
RPACG16650.3
RPACG16651.1
RPACG16652.1NOTCH LIGAND FAMILY MEMBER
RPACG16653.1
RPACG16653.2
RPACG16653.3
RPACG16654.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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