About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG16568.160 KDA RIBONUCLEOPROTEIN SSA/RO
RPACG16569.1UNNAMED PRODUCT
RPACG16570.1
RPACG16571.1
RPACG16572.1
RPACG16573.1
RPACG16574.1
RPACG16575.1
RPACG16576.1BETA TRANSDUCIN-RELATED PROTEIN
RPACG16577.1
RPACG16578.1PHOSPHOGLYCERATE MUTASE-RELATED
RPACG16579.1
RPACG16580.1RING FINGER PROTEIN 141-RELATED
RPACG16581.1RAS-ASSOCIATING DOMAIN CONTAINING PROTEIN
RPACG16582.1
RPACG16583.1LUNG ADENOMA SUSCEPTIBILITY 1-RELATED
RPACG16584.1NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED
RPACG16585.1THIOREDOXIN-LIKE PROTEN 4A, 4B
RPACG16586.1LD18447P
RPACG16587.1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
RPACG16588.1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
RPACG16589.1
RPACG16589.2
RPACG16590.1
RPACG16591.1
RPACG16592.1
RPACG16593.1
RPACG16594.1PROTEIN KINASE PKN/PRK1, EFFECTOR
RPACG16595.1
RPACG16596.1
RPACG16597.1
RPACG16598.1
RPACG16599.1
RPACG16600.1
RPACG16601.1
RPACG16602.1
RPACG16603.1
RPACG16604.1
RPACG16604.2
RPACG16604.3
RPACG16604.4
RPACG16605.1XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
RPACG16606.1XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
RPACG16606.2
RPACG16607.1
RPACG16608.1
RPACG16609.1DIHYDRODIPICOLINATE SYNTHASE
RPACG16610.1
RPACG16611.1
RPACG16612.1
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