Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2177799.1 | |
| KAK2177800.1 | |
| KAK2177801.1 | T-CELL LYMPHOMA BREAKPOINT-ASSOCIATED TARGET 1-RELATED |
| KAK2177802.1 | ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE |
| KAK2177803.1 | ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE |
| KAK2177804.1 | |
| KAK2177805.1 | TOL-PAL SYSTEM PROTEIN TOLA |
| KAK2177778.1 | SH3 MULTIPLE DOMAIN |
| KAK2177779.1 | 42-9-9 PROTEIN-RELATED |
| KAK2177780.1 | |
| KAK2177781.1 | |
| KAK2177782.1 | FIBROSIN FAMILY MEMBER |
| KAK2177783.1 | |
| KAK2177784.1 | |
| KAK2177785.1 | NA+/CA2+ K+ INDEPENDENT EXCHANGER |
| KAK2177786.1 | PBS LYASE HEAT-LIKE PROTEIN |
| KAK2177787.1 | PBS LYASE HEAT-LIKE PROTEIN |
| KAK2177788.1 | MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED |
| KAK2177789.1 | |
| KAK2177790.1 | |
| KAK2177791.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2177764.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2177765.1 | PROTEIN CBG20567 |
| KAK2177766.1 | SEPIAPTERIN REDUCTASE |
| KAK2177767.1 | 10 KDA HEAT SHOCK PROTEIN |
| KAK2177768.1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| KAK2177769.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| KAK2177770.1 | |
| KAK2177771.1 | |
| KAK2177772.1 | 2-5 OLIGOADENYLATE SYNTHETASE |
| KAK2177773.1 | |
| KAK2177774.1 | - |
| KAK2177775.1 | UPF0565 PROTEIN C2ORF69 |
| KAK2177776.1 | MY011 PROTEIN |
| KAK2177777.1 | INTEGRIN ALPHA |
| KAK2177754.1 | MONOCARBOXYLATE TRANSPORTER |
| KAK2177755.1 | BAND 7 PROTEIN-RELATED |
| KAK2177756.1 | BAND 7 PROTEIN-RELATED |
| KAK2177757.1 | MALE-ENHANCED ANTIGEN-1 |
| KAK2177758.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN L48 |
| KAK2177759.1 | HOMOLOC-13 |
| KAK2177760.1 | GLYCOPROTEIN HORMONE RECEPTOR |
| KAK2177761.1 | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE |
| KAK2177762.1 | DNA LIGASE |
| KAK2177763.1 | |
| KAK2177722.1 | |
| KAK2177723.1 | |
| KAK2177724.1 | |
| KAK2177725.1 | SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATED |
| KAK2177726.1 | SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATED |
