About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent2,196 the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894%31,703
ASM2569855v1574.96MbScaffold2022JALOCR01Third Institute of Oceanography, Ministry of Natural Resources, PRCPRJNA82620691.70%24,096

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294
The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environmentBMC Genomics36774470

Gene Information

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Gene IDDescription
KAK2177840.1
KAK2177841.1
KAK2177842.1
KAK2177843.1
KAK2177844.1AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY B
KAK2177845.1
KAK2177846.1
KAK2177847.1HISTIDINE-RICH GLYCOPROTEIN
KAK2177848.1NEUROTRANSMITTER GATED ION CHANNEL
KAK2177849.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
KAK2177850.1
KAK2177851.1
KAK2177852.1CADHERIN-87A
KAK2177806.1
KAK2177807.1INO80 COMPLEX SUBUNIT B
KAK2177808.1G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP
KAK2177809.1G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP
KAK2177810.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13
KAK2177811.1
KAK2177812.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13
KAK2177813.1
KAK2177814.1DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2
KAK2177815.1EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TRANSPORTER
KAK2177816.1
KAK2177817.1
KAK2177818.1
KAK2177819.1
KAK2177820.1SMALL NUCLEAR RIBONUCLEOPROTEIN SM
KAK2177821.1GUANYLYL CYCLASE DOMAIN CONTAINING PROTEIN 1 GUCD1
KAK2177822.1GUANYLYL CYCLASE DOMAIN CONTAINING PROTEIN 1 GUCD1
KAK2177823.1REVERSE TRANSCRIPTASES
KAK2177824.1
KAK2177825.1PROTEIN CBG26694
KAK2177826.1
KAK2177827.1REVERSE TRANSCRIPTASES
KAK2177828.1
KAK2177829.1
KAK2177830.1CT120 PROTEIN
KAK2177831.1SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7
KAK2177832.1SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7
KAK2177833.1UNCHARACTERIZED
KAK2177834.1
KAK2177835.1
KAK2177792.1
KAK2177793.1TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
KAK2177794.1
KAK2177795.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
KAK2177796.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
KAK2177797.1FTP DOMAIN-CONTAINING PROTEIN
KAK2177798.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
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