Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2183038.1 | |
| KAK2183039.1 | AQUAPORIN OR AQUAGLYCEROPORIN RELATED |
| KAK2183040.1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| KAK2183041.1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| KAK2183042.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| KAK2183043.1 | NETRIN/LAMININ-RELATED |
| KAK2183044.1 | |
| KAK2183045.1 | PROTEIN CBG26694 |
| KAK2183046.1 | |
| KAK2183047.1 | |
| KAK2183048.1 | |
| KAK2183015.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| KAK2183016.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| KAK2183017.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2183018.1 | TALIN |
| KAK2183019.1 | |
| KAK2183020.1 | TALIN |
| KAK2183021.1 | |
| KAK2183022.1 | |
| KAK2183023.1 | |
| KAK2183024.1 | TALIN |
| KAK2183025.1 | WD40 REPEAT DOMAIN 95 |
| KAK2183026.1 | |
| KAK2183027.1 | |
| KAK2183028.1 | REVERSE TRANSCRIPTASES |
| KAK2183029.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| KAK2183030.1 | |
| KAK2183031.1 | |
| KAK2183032.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2183033.1 | |
| KAK2182986.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| KAK2182987.1 | |
| KAK2182988.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| KAK2182989.1 | |
| KAK2182990.1 | RESPIRATORY NITRATE REDUCTASE |
| KAK2182991.1 | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER |
| KAK2182992.1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| KAK2182993.1 | |
| KAK2182994.1 | |
| KAK2182995.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| KAK2182996.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| KAK2182997.1 | |
| KAK2182998.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| KAK2182999.1 | |
| KAK2183000.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2183001.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2183002.1 | TRANSFERASE, PUTATIVE-RELATED |
| KAK2183003.1 | PROTEIN CBG11839-RELATED |
| KAK2183004.1 | |
| KAK2183005.1 | COLLAGEN ALPHA |
