Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2183311.1 | |
| KAK2183312.1 | E3 UBIQUITIN-PROTEIN LIGASE TOPORS |
| KAK2183313.1 | SNF2/RAD54 FAMILY MEMBER |
| KAK2183314.1 | ATP-DEPENDENT RNA AND DNA HELICASE |
| KAK2183315.1 | |
| KAK2183316.1 | ATP-DEPENDENT RNA AND DNA HELICASE |
| KAK2183317.1 | ANTERIOR GRADIENT PROTEIN-RELATED |
| KAK2183318.1 | CT120 PROTEIN |
| KAK2183319.1 | GLYCOSYL TRANSFERASE-RELATED |
| KAK2183320.1 | UNCHARACTERIZED |
| KAK2183321.1 | |
| KAK2183322.1 | SPOT2-RELATED |
| KAK2183323.1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| KAK2183324.1 | |
| KAK2183325.1 | GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT |
| KAK2183326.1 | |
| KAK2183327.1 | GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT |
| KAK2183328.1 | GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT |
| KAK2183329.1 | GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45 |
| KAK2183330.1 | RNA 3' TERMINAL PHOSPHATE CYCLASE |
| KAK2183331.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| KAK2183332.1 | |
| KAK2183333.1 | |
| KAK2183334.1 | PLACENTAL PROTEIN 11-RELATED |
| KAK2183335.1 | BUCENTAUR RELATED |
| KAK2183336.1 | |
| KAK2183337.1 | |
| KAK2183338.1 | |
| KAK2183339.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| KAK2183340.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| KAK2183341.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| KAK2183342.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| KAK2183343.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| KAK2183344.1 | |
| KAK2183345.1 | |
| KAK2183279.1 | SLIT HOMOLOG |
| KAK2183280.1 | CRUMBS FAMILY MEMBER |
| KAK2183281.1 | |
| KAK2183282.1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| KAK2183283.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2183284.1 | PROMININ PROM PROTEIN |
| KAK2183285.1 | |
| KAK2183286.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2183287.1 | |
| KAK2183288.1 | |
| KAK2183289.1 | CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB |
| KAK2183290.1 | CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB |
| KAK2183291.1 | |
| KAK2183292.1 | |
| KAK2183293.1 |
