Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2183617.1 | |
| KAK2183567.1 | MACROGLOBULIN / COMPLEMENT |
| KAK2183569.1 | MACROGLOBULIN / COMPLEMENT |
| KAK2183568.1 | |
| KAK2183570.1 | METABOTROPIC GLUTAMATE RECEPTOR |
| KAK2183571.1 | METABOTROPIC GLUTAMATE RECEPTOR |
| KAK2183572.1 | MACROGLOBULIN / COMPLEMENT |
| KAK2183573.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2183574.1 | |
| KAK2183575.1 | COLLAGEN ALPHA |
| KAK2183576.1 | COLLAGEN ALPHA |
| KAK2183577.1 | |
| KAK2183578.1 | |
| KAK2183579.1 | HYALURONIDASE |
| KAK2183580.1 | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA |
| KAK2183581.1 | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA |
| KAK2183582.1 | |
| KAK2183583.1 | 40S RIBOSOMAL PROTEIN S3A |
| KAK2183584.1 | 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 |
| KAK2183585.1 | X-RAY RADIATION RESISTANCE ASSOCIATED PROTEIN 1 XRRA1 |
| KAK2183586.1 | NF-KAPPA B ACTIVATING PROTEIN |
| KAK2183587.1 | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE |
| KAK2183588.1 | UNCHARACTERIZED |
| KAK2183589.1 | NEUROTRANSMITTER GATED ION CHANNEL |
| KAK2183590.1 | |
| KAK2183591.1 | LEUCOKININ RECEPTOR-RELATED |
| KAK2183592.1 | |
| KAK2183593.1 | SH2 DOMAIN CONTAINING PROTEIN |
| KAK2183551.1 | 50S RIBOSOMAL PROTEIN L21 |
| KAK2183552.1 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
| KAK2183553.1 | SPINAL CORD EXPRESSION PROTEIN 4 |
| KAK2183554.1 | LANC-LIKE PROTEIN |
| KAK2183555.1 | LANC-LIKE PROTEIN |
| KAK2183556.1 | UBIQUITIN THIOESTERASE |
| KAK2183557.1 | |
| KAK2183558.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2183559.1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| KAK2183560.1 | |
| KAK2183561.1 | |
| KAK2183562.1 | |
| KAK2183563.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2183564.1 | SYNAPTOTAGMIN |
| KAK2183565.1 | |
| KAK2183566.1 | CHAPERONIN |
| KAK2183534.1 | 50S RIBOSOMAL PROTEIN L9 |
| KAK2183535.1 | COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER |
| KAK2183536.1 | |
| KAK2183537.1 | |
| KAK2183538.1 | |
| KAK2183539.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
