About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides45654-
Paelopatides45655PROTEIN CBG26694
Paelopatides45656PROTEIN CBG26694
Paelopatides45657TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides45658FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides45659-
Paelopatides45660-
Paelopatides4566152 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides45662SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Paelopatides45663CONTACTIN 5
Paelopatides45664-
Paelopatides45665MEMBRANE COMPONENT OF ABC TRANSPORTER YHHJ-RELATED
Paelopatides45666-
Paelopatides45667ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides45668SOLUTE CARRIER FAMILY 35 MEMBER B
Paelopatides45669-
Paelopatides45670SYNAPTIC ADHESION-LIKE MOLECULE SALM
Paelopatides45671CELL SURFACE GLYCOPROTEIN MUC18-RELATED
Paelopatides45672NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides45673DUF3504 DOMAIN-CONTAINING PROTEIN
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