About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG09030.1
RPACG09031.1STYLE CELL-CYCLE INHIBITOR 1
RPACG09032.1
RPACG09033.1BTK-BINDING PROTEIN-RELATED
RPACG09034.1CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1
RPACG09035.1BETA-1,4-GALACTOSYLTRANSFERASE
RPACG09036.1
RPACG09037.1
RPACG09038.1DUF614 FAMILY PROTEIN-RELATED
RPACG09039.1
RPACG09040.1CADHERIN-87A
RPACG09041.1
RPACG09042.1
RPACG09043.1
RPACG09044.1
RPACG09045.1
RPACG09046.1
RPACG09047.1
RPACG09048.1
RPACG09049.1
RPACG09050.1
RPACG09051.1
RPACG09052.1
RPACG09053.1
RPACG09054.1
RPACG09055.1PANTOTHENATE KINASE
RPACG09056.1
RPACG09057.1
RPACG09058.1
RPACG09059.1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
RPACG09059.2
RPACG09060.1
RPACG09061.1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
RPACG09062.1SYNAPTOBREVIN FAMILY MEMBER
RPACG09063.1PUTATIVE ATP-ASE
RPACG09064.1LEUCINE RICH REPEAT PROTEIN
RPACG09065.1TOLL-LIKE RECEPTOR
RPACG09065.2
RPACG09066.1
RPACG09067.1FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED
RPACG09068.1PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED
RPACG09069.1DEOXYNUCLEOSIDE KINASE
RPACG09069.2DEOXYNUCLEOSIDE KINASE
RPACG09069.3
RPACG09070.1
RPACG09071.1CYTOSKELETON-ASSOCIATED PROTEIN 2-LIKE
RPACG09072.1TOLL-LIKE RECEPTOR
RPACG09073.1
RPACG09074.1
RPACG09074.2
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