Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2188527.1 | LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD |
| KAK2188528.1 | |
| KAK2188529.1 | |
| KAK2188530.1 | |
| KAK2188531.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2188532.1 | LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD |
| KAK2188533.1 | |
| KAK2188534.1 | VOLTAGE-GATED POTASSIUM CHANNEL |
| KAK2188535.1 | DELTA(14)-STEROL REDUCTASE |
| KAK2188536.1 | DELTA(14)-STEROL REDUCTASE |
| KAK2188537.1 | |
| KAK2188538.1 | CHITINASE |
| KAK2188539.1 | |
| KAK2188540.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2188541.1 | |
| KAK2188542.1 | |
| KAK2188543.1 | UNCHARACTERIZED |
| KAK2188544.1 | |
| KAK2188545.1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| KAK2188546.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| KAK2188547.1 | ADAPTIN, ALPHA/GAMMA/EPSILON |
| KAK2188548.1 | SERINE BETA-LACTAMASE-LIKE PROTEIN LACTB, MITOCHONDRIAL |
| KAK2188549.1 | NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 |
| KAK2188550.1 | TRANSMEMBRANE PROTEIN 14, 15 |
| KAK2188551.1 | PAK1 INTERACTING PROTEIN 1 |
| KAK2188552.1 | |
| KAK2188491.1 | |
| KAK2188492.1 | |
| KAK2188493.1 | |
| KAK2188494.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2188495.1 | |
| KAK2188496.1 | |
| KAK2188497.1 | L1 TRANSPOSABLE ELEMENT-RELATED |
| KAK2188498.1 | TOLL-LIKE RECEPTOR |
| KAK2188499.1 | |
| KAK2188500.1 | |
| KAK2188501.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| KAK2188502.1 | - |
| KAK2188503.1 | WD40 REPEAT PROTEIN |
| KAK2188504.1 | DESMOGLEIN FAMILY MEMBER |
| KAK2188505.1 | CADHERIN-23 |
| KAK2188506.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED |
| KAK2188507.1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
| KAK2188508.1 | 60S RIBOSOMAL PROTEIN L36A/L44 |
| KAK2188509.1 | |
| KAK2188510.1 | UNCHARACTERIZED |
| KAK2188511.1 | |
| KAK2188512.1 | |
| KAK2188513.1 | SUGAR KINASE |
| KAK2188514.1 | TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS |
