About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG04691.1
RPACG04692.1
RPACG04693.1
RPACG04693.2
RPACG04694.1
RPACG04695.1
RPACG04696.1
RPACG04696.2
RPACG04697.1
RPACG04698.1
RPACG04699.1
RPACG04699.2
RPACG04700.1
RPACG04701.1
RPACG04701.2
RPACG04702.1
RPACG04703.1
RPACG04704.1
RPACG04704.2
RPACG04705.1
RPACG04706.1
RPACG04707.1
RPACG04708.1
RPACG04709.1
RPACG04710.1
RPACG04711.1SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
RPACG04712.1
RPACG04713.1
RPACG04714.1
RPACG04715.1
RPACG04716.1PROTEIN SIDEKICK
RPACG04717.1EGF-LIKE-DOMAIN, MULTIPLE 7, 8
RPACG04718.1
RPACG04719.1CAMK FAMILY PROTEIN KINASE
RPACG04720.1PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
RPACG04721.1PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
RPACG04722.1OXYSTEROL-BINDING PROTEIN-RELATED
RPACG04723.1
RPACG04723.2
RPACG04724.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14
RPACG04725.1GLYCOLIPID TRANSFER PROTEIN-RELATED
RPACG04726.1ARMADILLO SEGMENT POLARITY PROTEIN
RPACG04726.2
RPACG04726.3
RPACG04727.1DNAJ HOMOLOG SUBFAMILY C MEMBER 10
RPACG04728.1ANKYRIN REPEAT CONTAINING
RPACG04729.1BLR2807 PROTEIN
RPACG04730.1BLR2807 PROTEIN
RPACG04731.1
RPACG04732.1BLR2807 PROTEIN
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