About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG04424.1MUCIN-17
RPACG04425.1
RPACG04426.1LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2
RPACG04427.1LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2
RPACG04428.1
RPACG04429.1REPETIN
RPACG04430.1
RPACG04431.1PROTEIN EVA-1
RPACG04432.1
RPACG04433.1
RPACG04434.1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
RPACG04435.1IRE1-RELATED
RPACG04436.1
RPACG04437.1
RPACG04438.1
RPACG04439.1
RPACG04440.1
RPACG04441.1
RPACG04442.1
RPACG04443.1
RPACG04444.1
RPACG04445.1
RPACG04446.1APG9 AUTOPHAGY 9
RPACG04447.1UNCHARACTERIZED
RPACG04448.1LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2
RPACG04449.1LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2
RPACG04450.1
RPACG04451.1DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
RPACG04452.1
RPACG04453.1
RPACG04454.1
RPACG04455.1PDZ AND LIM DOMAIN PROTEIN ZASP
RPACG04456.1MUCIN-17
RPACG04457.1PDZ AND LIM DOMAIN PROTEIN ZASP
RPACG04458.1
RPACG04459.1
RPACG04460.1
RPACG04461.1
RPACG04462.1
RPACG04462.2
RPACG04463.1
RPACG04464.1
RPACG04465.1
RPACG04466.1
RPACG04467.1
RPACG04468.1
RPACG04469.1COLLAGEN ALPHA
RPACG04470.1
RPACG04471.1SI:CH211-201H21.5-RELATED
RPACG04472.1PDZ AND LIM DOMAIN PROTEIN ZASP
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