About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG04202.1
RPACG04203.1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
RPACG04203.2
RPACG04204.1GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED
RPACG04204.2
RPACG04205.1
RPACG04206.1PROTEIN CBG17025
RPACG04207.1
RPACG04208.1P-SELECTIN GLYCOPROTEIN LIGAND-1
RPACG04209.1UNCHARACTERIZED
RPACG04210.1SYNAPTIC ADHESION-LIKE MOLECULE SALM
RPACG04211.1
RPACG04212.1SKI ONCOGENE-RELATED
RPACG04213.1
RPACG04214.1IP19862P
RPACG04215.14.1 G PROTEIN
RPACG04216.1SERINE/ARGININE REPETITIVE MATRIX PROTEIN 5-RELATED
RPACG04217.1
RPACG04218.1
RPACG04219.1PATCHED-RELATED
RPACG04220.1PATCHED-RELATED
RPACG04220.2
RPACG04221.1
RPACG04222.1
RPACG04223.1SOLUTE CARRIER FAMILY 2
RPACG04224.1
RPACG04225.1E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER
RPACG04226.1
RPACG04227.1HOMEOBOX PROTEIN, PUTATIVE-RELATED
RPACG04228.1
RPACG04229.1
RPACG04230.1-
RPACG04231.1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
RPACG04232.1
RPACG04232.2
RPACG04233.1TUDOR DOMAIN CONTAINING PROTEIN
RPACG04234.1CHITIN SYNTHASE
RPACG04235.1
RPACG04236.1
RPACG04237.1
RPACG04238.1MYOSIN
RPACG04239.1
RPACG04240.1
RPACG04241.1
RPACG04242.1AGAP011099-PA
RPACG04243.1
RPACG04244.1CHITIN SYNTHASE
RPACG04245.1
RPACG04246.1
RPACG04246.2
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