About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG04647.1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
RPACG04648.1
RPACG04649.1
RPACG04650.1G-PROTEIN COUPLED RECEPTOR
RPACG04651.1
RPACG04652.1
RPACG04653.1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
RPACG04654.1BETA TRANSDUCIN-RELATED PROTEIN
RPACG04655.1
RPACG04655.2
RPACG04655.3
RPACG04656.1
RPACG04657.1
RPACG04658.1
RPACG04659.1
RPACG04660.1
RPACG04661.1
RPACG04662.1
RPACG04663.1
RPACG04664.1
RPACG04665.1
RPACG04666.1
RPACG04667.1
RPACG04668.1FIBROIN HEAVY CHAIN FIB-H LIKE PROTEIN
RPACG04669.1
RPACG04670.1TENSIN
RPACG04671.1ZINC FINGER AND SCAN DOMAIN-CONTAINING
RPACG04672.1ZINC FINGER PROTEIN
RPACG04673.1LP04239P
RPACG04674.1-
RPACG04675.1ENDO-1,4-BETA-GLUCANASE
RPACG04676.1ENDO-1,4-BETA-GLUCANASE
RPACG04677.1CGI-141-RELATED/LIPASE CONTAINING PROTEIN
RPACG04678.1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
RPACG04679.1LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
RPACG04680.1
RPACG04681.1UNCHARACTERIZED
RPACG04682.1
RPACG04683.1BLR7054 PROTEIN
RPACG04683.2
RPACG04683.3
RPACG04684.1
RPACG04684.2
RPACG04685.1GLYCOSYLTRANSFERASE
RPACG04686.1GLYCOSYLTRANSFERASE-RELATED
RPACG04686.2
RPACG04687.1SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
RPACG04688.1
RPACG04689.1
RPACG04690.1
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