About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s055.g0094.t1TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN
Lsat_s055.g0095.t1RNA BINDING PROTEIN PUMILIO-RELATED
Lsat_s055.g0096.t1PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Lsat_s055.g0097.t1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Lsat_s055.g0098.t1AGAP008170-PA
Lsat_s055.g0099.t1-
Lsat_s055.g0100.t1CLATHRIN LIGHT CHAIN
Lsat_s055.g0101.t1U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN
Lsat_s055.g0102.t1DNA-DIRECTED RNA POLYMERASE
Lsat_s055.g0103.t1TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
Lsat_s055.g0104.t1ARSENITE-RESISTANCE PROTEIN 2
Lsat_s055.g0105.t1KRAB AND ZINC FINGER DOMAIN-CONTAINING
Lsat_s055.g0106.t1PALMITOYLTRANSFERASE ZDHHC16
Lsat_s055.g0107.t1PKSB
Lsat_s055.g0108.t1YTH YT521-B HOMOLOGY DOMAIN-CONTAINING
Lsat_s055.g0109.t1-
Lsat_s055.g0110.t1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
Lsat_s055.g0111.t1LEISHMANOLYSIN-LIKE PEPTIDASE
Lsat_s055.g0112.t1ANKYRIN REPEAT AND DEATH DOMAIN-CONTAINING PROTEIN
Lsat_s055.g0113.t1DIOXYGENASE RV0097-RELATED
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