About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s052.g0136.t1SHORT-CHAIN DEHYDROGENASE/REDUCTASE
Lsat_s052.g0137.t15-HYDROXYTRYPTAMINE RECEPTOR
Lsat_s052.g0138.t1-
Lsat_s052.g0139.t15-HYDROXYTRYPTAMINE RECEPTOR
Lsat_s052.g0140.t1CALCIUM-TRANSPORTING ATPASE
Lsat_s052.g0141.t1MONOCARBOXYLATE TRANSPORTER
Lsat_s052.g0142.t1COILED-COIL DOMAIN-CONTAINING PROTEIN 30
Lsat_s052.g0143.t1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Lsat_s052.g0144.t1-
Lsat_s052.g0145.t1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Lsat_s052.g0146.t1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10
Lsat_s052.g0147.t1ZINC FINGER PROTEIN 142
Lsat_s052.g0148.t1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
Lsat_s052.g0149.t1PROTEIN CBG26694
Lsat_s052.g0150.t1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
Lsat_s052.g0151.t1TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
Lsat_s052.g0152.t1RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR-RELATED
Lsat_s052.g0153.t1UBIQUITIN-CONJUGATING ENZYME E2
Lsat_s052.g0154.t1CHARGED MULTIVESICULAR BODY PROTEIN
Lsat_s052.g0155.t1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
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