About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s052.g0116.t1ADP RIBOSYLATION FACTOR-RELATED
Lsat_s052.g0117.t1TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
Lsat_s052.g0118.t1SOLUTE CARRIER FAMILY 2
Lsat_s052.g0119.t1-
Lsat_s052.g0120.t1TRANSMEMBRANE PROTEIN 201
Lsat_s052.g0121.t1PROTEIN-S ISOPRENYLCYSTEINE O-METHYLTRANSFERASE
Lsat_s052.g0122.t1ARM REPEAT SUPERFAMILY PROTEIN
Lsat_s052.g0123.t1VEZATIN
Lsat_s052.g0124.t1SIGMA 1-TYPE OPIOID RECEPTOR-RELATED
Lsat_s052.g0125.t1-
Lsat_s052.g0126.t1REPRESSOR OF RNA POLYMERASE III TRANSCRIPTION MAF1
Lsat_s052.g0127.t1PACHYTENE CHECKPOINT PROTEIN 2
Lsat_s052.g0128.t1BROMODOMAIN CONTAINING PROTEIN
Lsat_s052.g0129.t1ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED
Lsat_s052.g0130.t1ACETYL-COA HYDROLASE-RELATED
Lsat_s052.g0131.t1SMALL VASOHIBIN-BINDING PROTEIN
Lsat_s052.g0132.t1CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7
Lsat_s052.g0133.t1ANOCTAMIN
Lsat_s052.g0134.t1SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED
Lsat_s052.g0135.t1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED
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