About Bathyacmaea lactea

The deep-sea limpet Bathyacmaea lactea is a species in the family Acmaeidae. And it is a common species associated with the dominant mussel beds in cold seeps. They can feed on bacteria and decomposing the periostracum of Bathymodiolus shells, which make deep-sea limpets different from the well-studied symbionts.

Classification

Animalia (Kingdom); Mollusca (Phylum); Gastropoda (Class); Patellogastropoda (Subclass); Lottioidea (Superfamily); Pectinodontidae (Family); Bathyacmaea (Genus); Bathyacmaea lactea (Species)

Original Name

Bathyacmaea lactea S.-Q. Zhang, J.-L. Zhang & S.-P. Zhang, 2016

Key Reference Paper

1. Zhang S, Zhang J, Zhang S. A new species of Bathyacmaea (Gastropoda: Pectinodontidae) from a methane seep area in the South China Sea[J]. Nautilus, 2016, 130(1): 1-4. (Zhang et al., 2016)

Description

Shell whitish, longitudinally elongated. Shell surface with relatively smooth sculpture consisting of dense growth lines and microscopic radial threads. Apertural margin strongly chipped, forming denticle-like structure. Radular formula 0-1-0-1-0. Lateral teeth trifurcated, with straight, stout shaft. All three cusps out¬ wardly bent; innermost and middle cups sickle-shaped and subequal in size, outermost one smallest, with acute tip

Etymology

Latin lactea, meaning milky white, a reference to die shell color of the new species

Distribution

A methane seep area at 22°07' N, 119° 18' E, in 1132.5 m depth. South China Sea


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathyacmaea lacteaMolluscadeep-sea limpet Bathyacmaea lacteaCold seep1,388Haima cold seeps in the South China Sea2049241

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-754.3MbContig2020-Hong Kong University of Science and TechnologyPRJNA588374 94.30 157032.6761.423,574

References
TitleJournalPubmed ID
De Novo Genome Assembly of Limpet Bathyacmaea lactea (Gastropoda: Pectinodontidae): The First Reference Genome of a Deep-Sea Gastropod Endemic to Cold SeepsGenome Biol Evol32467969

Gene Information

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Gene IDDescription
MBSQW58_g6638CYCLIN Y, ISOFORM A
MBSQW58_g6639PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
MBSQW58_g664U6 SNRNA-ASSOCIATED PROTEIN
MBSQW58_g6640-
MBSQW58_g6641-
MBSQW58_g6642UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
MBSQW58_g6643NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED
MBSQW58_g6644-
MBSQW58_g6645CYSTEINE PROTEASE FAMILY C1-RELATED
MBSQW58_g6646VHS DOMAIN CONTAINING PROTEIN FAMILY
MBSQW58_g6647PHYTANOYL-COA DIOXYGENASE-RELATED-RELATED
MBSQW58_g6648PROTEIN VASCULAR ASSOCIATED DEATH 1, CHLOROPLASTIC
MBSQW58_g6649MULTICOPPER OXIDASE-RELATED
MBSQW58_g665MITOGEN-ACTIVATED PROTEIN KINASE
MBSQW58_g6650-
MBSQW58_g6651-
MBSQW58_g6652AMSH-LIKE PROTEASE
MBSQW58_g6653OPIOID GROWTH FACTOR RECEPTOR OGFR ZETA-TYPE OPIOID RECEPTOR
MBSQW58_g6654ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL
MBSQW58_g6655L-GULONOLACTONE OXIDASE

Results of comparison between Bathyacmaea lactea and its nearshore relatives from the paper (Liu et al., 2020)

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Annotation IDDescriptionTypeSubtypeGeneRatioEvolution TypeP-valueQ-value
GO:0016301kinase activityGOMolecular Function-rapid evolution3.19E-2494.28E-247
GO:0016301kinase activityGOMolecular Function-expanded-0.005298671
GO:0016772transferase activity, transferring phosphorus-containing groupsGOMolecular Function-rapid evolution2.94E-2423.91E-240
GO:0016772transferase activity, transferring phosphorus-containing groupsGOMolecular Function-expanded-0.032978854
GO:0044249cellular biosynthetic processGOBiological Process-rapid evolution5.43E-2417.16E-239
GO:0044249cellular biosynthetic processGOBiological Process-expanded-0.002819047
GO:0097159organic cyclic compound bindingGOMolecular Function-rapid evolution5.49E-2327.19E-230
GO:0097159organic cyclic compound bindingGOMolecular Function-expanded-3.96E-39
GO:1901363heterocyclic compound bindingGOMolecular Function-rapid evolution5.49E-2327.19E-230
GO:1901363heterocyclic compound bindingGOMolecular Function-expanded-3.96E-39
GO:0009058biosynthetic processGOBiological Process-rapid evolution2.32E-2132.99E-211
GO:0009058biosynthetic processGOBiological Process-expanded-0.000531164
GO:0003676nucleic acid bindingGOMolecular Function-rapid evolution2.23E-1852.85E-183
GO:0003676nucleic acid bindingGOMolecular Function-expanded-1.18E-95
GO:0043227membrane-bounded organelleGOCellular Component-rapid evolution1.26E-1521.60E-150
GO:0043231intracellular membrane-bounded organelleGOCellular Component-rapid evolution1.26E-1521.60E-150
GO:0044281small molecule metabolic processGOBiological Process-rapid evolution6.26E-1307.82E-128
GO:0044281small molecule metabolic processGOBiological Process-expanded-0.002199807
GO:0043226organelleGOCellular Component-rapid evolution1.19E-1211.47E-119
GO:0043229intracellular organelleGOCellular Component-rapid evolution1.19E-1211.47E-119
GO:0016740transferase activityGOMolecular Function-rapid evolution3.09E-1203.77E-118
GO:0046872metal ion bindingGOMolecular Function-rapid evolution3.84E-1114.64E-109
GO:0046872metal ion bindingGOMolecular Function-expanded-1.47E-15
GO:0043167ion bindingGOMolecular Function-rapid evolution4.32E-1055.18E-103
GO:0043167ion bindingGOMolecular Function-expanded-4.36E-15
GO:0043169cation bindingGOMolecular Function-rapid evolution4.32E-1055.18E-103
GO:0043169cation bindingGOMolecular Function-expanded-4.36E-15
GO:0019222regulation of metabolic processGOBiological Process-rapid evolution2.86E-853.38E-83
GO:0044424intracellular partGOCellular Component-rapid evolution1.29E-841.51E-82
GO:0044424intracellular partGOCellular Component-expanded-1.00E-07
GO:0005488bindingGOMolecular Function-rapid evolution3.80E-824.41E-80
GO:0005488bindingGOMolecular Function-expanded-2.44E-34
GO:0031323regulation of cellular metabolic processGOBiological Process-rapid evolution1.78E-812.04E-79
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