About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s040.g0121.t1SEMAPHORIN
Lsat_s040.g0122.t1-
Lsat_s040.g0123.t1-
Lsat_s040.g0124.t1-
Lsat_s040.g0125.t1TROPONIN C-AKIN-1 PROTEIN
Lsat_s040.g0126.t1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Lsat_s040.g0127.t1HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN
Lsat_s040.g0128.t1CHROMOBOX PROTEIN
Lsat_s040.g0129.t1HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN
Lsat_s040.g0130.t1FAST LEU-RICH DOMAIN-CONTAINING
Lsat_s040.g0131.t1CONDENSIN-2 COMPLEX SUBUNIT G2
Lsat_s040.g0132.t1SMARCE1 REGULATOR OF CHROMATIN
Lsat_s040.g0133.t1DNA REPLICATION REGULATOR DPB11-RELATED
Lsat_s040.g0134.t1PYRUVATE DEHYDROGENASE KINASE
Lsat_s040.g0135.t1-
Lsat_s040.g0136.t1SOLUTE CARRIER FAMILY 39
Lsat_s040.g0137.t1PROTEIN CDV3 HOMOLOG
Lsat_s040.g0138.t1ENHANCER OF MRNA-DECAPPING PROTEIN 4
Lsat_s040.g0139.t1-
Lsat_s040.g0140.t1-
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