About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s036.g0210.t1-
Lsat_s036.g0211.t1FMRFAMIDE RECEPTOR-RELATED
Lsat_s036.g0212.t1SEC63 DOMAIN-CONTAINING
Lsat_s036.g0213.t1IST1 FAMILY MEMBER
Lsat_s036.g0214.t1BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
Lsat_s036.g0215.t1CDC37-RELATED
Lsat_s036.g0216.t1PROTEIN CBG19621
Lsat_s036.g0217.t1DIGEORGE SYNDROME CRITICAL REGION 6 DGCR6 FAMILY MEMBER
Lsat_s036.g0218.t1FLAGELLAR RADIAL SPOKE PROTEIN 3
Lsat_s036.g0219.t1FLAGELLAR RADIAL SPOKE PROTEIN 3
Lsat_s036.g0220.t1FERREDOXIN/ADRENODOXIN
Lsat_s036.g0221.t1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Lsat_s036.g0222.t1GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
Lsat_s036.g0223.t1COATOMER SUBUNIT BETA
Lsat_s036.g0224.t1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
Lsat_s036.g0225.t1INNER CENTROMERE PROTEIN
Lsat_s036.g0226.t1MITOCHONDRIAL ATP SYNTHASE B CHAIN
Lsat_s036.g0227.t1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Lsat_s036.g0228.t1-
Lsat_s036.g0229.t1BONUS, ISOFORM C-RELATED
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