Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2190957.1 | |
| KAK2190958.1 | ASPARTYL AMINOPEPTIDASE |
| KAK2190959.1 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
| KAK2190960.1 | STEROL DESATURASE |
| KAK2190961.1 | |
| KAK2190962.1 | VACUOLAR ATP SYNTHASE SUBUNIT F |
| KAK2190963.1 | |
| KAK2190964.1 | PROTEIN C7ORF21 |
| KAK2190965.1 | |
| KAK2190966.1 | |
| KAK2190967.1 | |
| KAK2190968.1 | |
| KAK2190969.1 | |
| KAK2190970.1 | |
| KAK2190971.1 | |
| KAK2190972.1 | |
| KAK2190973.1 | POLYCYSTIN FAMILY MEMBER |
| KAK2190974.1 | POLYCYSTIN-1 |
| KAK2190975.1 | |
| KAK2190976.1 | ZINC FINGER PROTEIN |
| KAK2190876.1 | |
| KAK2190877.1 | |
| KAK2190878.1 | |
| KAK2190879.1 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
| KAK2190880.1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| KAK2190881.1 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
| KAK2190882.1 | |
| KAK2190883.1 | PROTEIN C3ORF33 |
| KAK2190884.1 | |
| KAK2190885.1 | UNCHARACTERIZED |
| KAK2190886.1 | UNCHARACTERIZED |
| KAK2190887.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
| KAK2190888.1 | |
| KAK2190889.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
| KAK2190890.1 | UNCHARACTERIZED |
| KAK2190891.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
| KAK2190892.1 | |
| KAK2190893.1 | BLR2807 PROTEIN |
| KAK2190894.1 | METHYLTHIOADENOSINE/PURINE NUCLEOSIDE PHOSPHORYLASE |
| KAK2190895.1 | SOLUTE CARRIER FAMILY 52 |
| KAK2190896.1 | |
| KAK2190897.1 | |
| KAK2190898.1 | IRE1-RELATED |
| KAK2190899.1 | |
| KAK2190900.1 | TRANSPORT PROTEIN TRAPP |
| KAK2190901.1 | LEUCINE-RICH REPEAT, ISOFORM F-RELATED |
| KAK2190902.1 | GLOMULIN |
| KAK2190903.1 | UBIQUINONE BIOSYNTHESIS PROTEIN COQ9, MITOCHONDRIAL |
| KAK2190904.1 | PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT |
| KAK2190905.1 | G PATCH DOMAIN-CONTAINING PROTEIN 1 |
