About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Ridgeia (Genus); Ridgeia piscesae (Species)

Original Name

Ridgeia piscesae Jones, 1985

Key Reference Paper

1. Jones M L. On the Vestimentifera, new phylum: six new species, and other taxa, from hydrothermal vents and elsewhere[J]. Bull Biol Soc Wash, 1985, 6: 117. (Jones et al., 1985)
2. Southward E C, Tunnicliffe V, Black M. Revision of the species of Ridgeia from northeast Pacific hydrothermal vents, with a redescription of Ridgeia piscesae Jones (Pogonophora: Obturata= Vestimentifera)[J]. Canadian Journal of zoology, 1995, 73(2): 282-295. (Southward et al., 1995)

Distribution

Shepherd's Vent, Axial Seamount, Juande Fuca Ridge. Hydrothermal vents of Juan de Fuca Ridgeand northern Gorda Ridge


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent1,780-2,227the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894.00 365.441-31,703

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294

Gene Information

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Gene IDDescription
KAK2193020.1CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 9
KAK2193021.1-
KAK2193022.1CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
KAK2193023.1-
KAK2193024.1NEURALIZED
KAK2193025.1NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER
KAK2193026.1-
KAK2193027.1-
KAK2193028.1GTP-BINDING PROTEIN ALPHA SUBUNIT
KAK2193029.1-
KAK2193030.1GTP-BINDING PROTEIN ALPHA SUBUNIT
KAK2193031.1ANKYRIN REPEAT FAMILY PROTEIN
KAK2193032.1NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED
KAK2193033.1NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED
KAK2193034.1PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
KAK2193035.1MONOCARBOXYLATE TRANSPORTER
KAK2193036.1UBIQUITIN-CONJUGATING ENZYME E2
KAK2193037.1PIG-M MANNOSYLTRANSFERASE
KAK2193038.1ZINC FINGER PROTEIN
KAK2193039.1-
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