About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent2,196 the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894%31,703
ASM2569855v1574.96MbScaffold2022JALOCR01Third Institute of Oceanography, Ministry of Natural Resources, PRCPRJNA82620691.70%24,096

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294
The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environmentBMC Genomics36774470

Gene Information

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Gene IDDescription
KAK2191262.1
KAK2191263.1TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
KAK2191264.1
KAK2191265.1
KAK2191266.1
KAK2191267.1REMODELING AND SPACING FACTOR 1
KAK2191268.1NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4
KAK2191269.1
KAK2191270.1
KAK2191271.1
KAK2191272.1
KAK2191273.1
KAK2191274.1
KAK2191275.1MUSCLEBLIND-LIKE PROTEIN
KAK2191276.1
KAK2191277.1ALCOHOL O-ACETYLTRANSFERASE 1-RELATED
KAK2191278.1OUTER SEGMENT 5
KAK2191279.1TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
KAK2191280.1MONOCARBOXYLATE TRANSPORTER
KAK2191281.1PROFILIN
KAK2191282.1ATP-DEPENDENT DNA HELICASE
KAK2191283.1THAP DOMAIN PROTEIN
KAK2191284.1
KAK2191285.1RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED
KAK2191286.1RYANODINE RECEPTOR AND IP3 RECEPTOR
KAK2191287.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
KAK2191288.1
KAK2191289.1RYANODINE RECEPTOR AND IP3 RECEPTOR
KAK2191290.1
KAK2191291.1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
KAK2191292.1CATION TRANSPORT PROTEIN CHAC-RELATED
KAK2191293.1TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
KAK2191294.1TYROSINE-PROTEIN KINASE RECEPTOR
KAK2191295.1CELL CYCLE CONTROL PROTEIN CWF15
KAK2191296.1
KAK2191297.1
KAK2191298.1TRANSFERASE, PUTATIVE-RELATED
KAK2191299.1TRANSFERASE, PUTATIVE-RELATED
KAK2191300.1
KAK2191301.1
KAK2191210.1
KAK2191211.1REVERSE TRANSCRIPTASES
KAK2191212.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
KAK2191213.1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
KAK2191214.1BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED
KAK2191215.1BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED
KAK2191216.1EXPRESSED PROTEIN
KAK2191217.1TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
KAK2191218.1
KAK2191219.1
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