About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_9766-1.6CHITIN SYNTHASE
Bpl_scaf_9766-1.7
Bpl_scaf_9766-2.13GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
Bpl_scaf_9766-2.17GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
Bpl_scaf_9766-2.8ABC1 FAMILY PROTEIN
Bpl_scaf_9766-3.5RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C
Bpl_scaf_9766-4.18
Bpl_scaf_9766-4.20UNCHARACTERIZED
Bpl_scaf_9766-4.22UNCHARACTERIZED
Bpl_scaf_9766-4.24CHROMOSOME 20 ORF85 FAMILY MEMBER
Bpl_scaf_9776-0.0
Bpl_scaf_9776-0.1
Bpl_scaf_9789-0.4BRYOPORIN
Bpl_scaf_9797-0.4MOLTING PROTEIN MLT-4
Bpl_scaf_9797-0.7L1 TRANSPOSABLE ELEMENT-RELATED
Bpl_scaf_980-0.8ANKYRIN REPEAT-CONTAINING
Bpl_scaf_9808-0.9TRANSDUCER OF ERBB2 TOB
Bpl_scaf_9822-0.0
Bpl_scaf_9822-0.13
Bpl_scaf_9822-0.17
Bpl_scaf_9846-0.0
Bpl_scaf_9846-0.1
Bpl_scaf_9856-0.12
Bpl_scaf_9856-0.13RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_9856-0.14
Bpl_scaf_9856-0.9
Bpl_scaf_9864-0.0RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
Bpl_scaf_9864-0.45-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED
Bpl_scaf_9876-0.4
Bpl_scaf_988-0.0
Bpl_scaf_9888-0.2IQ CALMODULIN-BINDING MOTIF CONTAINING PROTEIN 1
Bpl_scaf_9904-0.0
Bpl_scaf_9904-0.2ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
Bpl_scaf_9904-0.5
Bpl_scaf_9918-0.2
Bpl_scaf_9927-0.12
Bpl_scaf_9927-0.13
Bpl_scaf_9942-0.0
Bpl_scaf_9942-0.10INTERFERON-INDUCIBLE GTPASE
Bpl_scaf_9950-0.23ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Bpl_scaf_9950-0.47ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Bpl_scaf_9950-0.49ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Bpl_scaf_9958-0.12NITRIC OXIDE SYNTHASE-RELATED
Bpl_scaf_9958-0.13
Bpl_scaf_9959-0.10
Bpl_scaf_9959-0.7DEOXYRIBONUCLEASE TATDN2-RELATED
Bpl_scaf_9959-0.9IG-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_9959-1.11SIDESTEP PROTEIN
Bpl_scaf_9959-2.13IG-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_9959-3.15SIDESTEP PROTEIN
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