About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG26141.2
RPACG26141.3
RPACG26142.1DULLARD PROTEIN PHOSPHATASE
RPACG26143.1
RPACG26144.1
RPACG26145.1NOTCH LIGAND FAMILY MEMBER
RPACG26146.1
RPACG26147.1
RPACG26148.1
RPACG26149.1
RPACG26150.1
RPACG26150.2
RPACG26150.3
RPACG26151.1
RPACG26152.1
RPACG26153.1CATION TRANSPORT PROTEIN CHAC-RELATED
RPACG26154.1HELICASE SRCAP-RELATED
RPACG26155.1RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
RPACG26155.2
RPACG26156.1ZYGIN
RPACG26157.1ZYGIN
RPACG26158.1
RPACG26159.1
RPACG26160.1
RPACG26161.1
RPACG26162.1
RPACG26163.1PURPLE ACID PHOSPHATASE
RPACG26164.1PURPLE ACID PHOSPHATASE
RPACG26165.1PURPLE ACID PHOSPHATASE
RPACG26166.1UNCHARACTERIZED
RPACG26167.1BCS1 AAA-TYPE ATPASE
RPACG26168.1
RPACG26169.1
RPACG26169.2
RPACG26170.1
RPACG26171.1TYROSINE-PROTEIN KINASE RECEPTOR
RPACG26172.1
RPACG26173.1LUNG SEVEN TRANSMEMBRANE RECEPTOR
RPACG26174.1LUNG SEVEN TRANSMEMBRANE RECEPTOR
RPACG26175.1CNH DOMAIN CONTAINING
RPACG26176.1ZINC FINGER CONTAINING PROTEIN
RPACG26176.2
RPACG26177.1PROTEIN MEMO1
RPACG26178.1EGL NINE HOMOLOG-RELATED
RPACG26179.1
RPACG26180.1SENSOR KINASE-RELATED
RPACG26181.1
RPACG26182.1MUCIN 4-RELATED
RPACG26183.1MUCIN 4-RELATED
RPACG26184.1MUCIN 4-RELATED
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