About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG26050.2
RPACG26051.1
RPACG26052.1UNCHARACTERIZED
RPACG26053.1
RPACG26054.1
RPACG26055.1
RPACG26056.1
RPACG26057.1
RPACG26058.1
RPACG26059.1
RPACG26060.1
RPACG26061.1
RPACG26062.1
RPACG26062.2
RPACG26062.3
RPACG26063.1
RPACG26064.1
RPACG26065.1
RPACG26066.1
RPACG26067.1MYC PROTO-ONCOGENE
RPACG26068.1TRNA DIMETHYLALLYLTRANSFERASE
RPACG26069.1
RPACG26070.1
RPACG26071.1
RPACG26072.1
RPACG26073.1CYSTEINE-RICH, ACIDIC INTEGRAL MEMBRANE PROTEIN-RELATED
RPACG26074.1ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
RPACG26075.1SCY1-RELATED S/T PROTEIN KINASE-LIKE
RPACG26076.1
RPACG26077.1
RPACG26078.1ANTIBIOTIC RESISTANCE PROTEIN MCBG
RPACG26079.1
RPACG26080.1
RPACG26081.1
RPACG26082.1
RPACG26083.1
RPACG26084.1
RPACG26085.1
RPACG26086.1
RPACG26087.1G-PROTEIN COUPLED RECEPTOR
RPACG26088.1G-PROTEIN COUPLED RECEPTOR
RPACG26089.1G-PROTEIN COUPLED RECEPTOR
RPACG26090.1G-PROTEIN COUPLED RECEPTOR
RPACG26091.1
RPACG26092.1G-PROTEIN COUPLED RECEPTOR
RPACG26093.1G-PROTEIN COUPLED RECEPTOR
RPACG26094.1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
RPACG26095.1G-PROTEIN COUPLED RECEPTOR
RPACG26096.1
RPACG26097.1PR DOMAIN ZINC FINGER PROTEIN
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