About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG25521.2
RPACG25522.1
RPACG25522.2
RPACG25523.1
RPACG25524.1
RPACG25525.1
RPACG25526.1
RPACG25527.1
RPACG25528.1
RPACG25529.1FORKHEAD BOX PROTEIN
RPACG25530.1
RPACG25531.1HEAT SHOCK TRANSCRIPTION FACTOR
RPACG25532.1
RPACG25533.1COILED-COIL DOMAIN-CONTAINING PROTEIN 24
RPACG25534.1PIKACHURIN-LIKE PROTEIN
RPACG25535.1PIKACHURIN-LIKE PROTEIN
RPACG25536.1LEUCINE RICH REPEAT PROTEIN
RPACG25537.1GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
RPACG25538.1WD40 REPEAT PROTEIN 12, 37
RPACG25539.1IMPORTIN BETA
RPACG25540.1
RPACG25541.1
RPACG25542.1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
RPACG25543.1
RPACG25544.1
RPACG25545.1PROPERDIN
RPACG25546.1
RPACG25547.1
RPACG25548.1PROTEIN CBG17025
RPACG25549.1PROPERDIN
RPACG25550.1
RPACG25551.1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
RPACG25552.1L-ASPARAGINASE
RPACG25552.2
RPACG25553.1L-ASPARAGINASE
RPACG25554.1SAM DOMAIN-CONTAINING PROTEIN-RELATED
RPACG25555.1
RPACG25556.1-
RPACG25557.1NEURALIZED
RPACG25558.1GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEINS-INTERACTING PROTEIN 1 GADD45GIP1
RPACG25558.2
RPACG25559.1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
RPACG25560.1
RPACG25561.1STG PROTEIN
RPACG25562.1
RPACG25563.1
RPACG25564.1
RPACG25565.1
RPACG25565.2
RPACG25566.1
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