About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG25480.1F-BOX/TPR REPEAT PROTEIN POF3
RPACG25481.1SREK1IP1 FAMILY MEMBER
RPACG25482.1PROTEIN FAM91A1
RPACG25483.1DYNEIN INTERMEDIATE CHAIN
RPACG25484.1AMINO ACID TRANSPORTER
RPACG25485.1PHOSPHOHEXOMUTASE FAMILY MEMBER
RPACG25486.1PHOSPHOHEXOMUTASE FAMILY MEMBER
RPACG25486.2
RPACG25487.1
RPACG25487.2
RPACG25488.1
RPACG25489.1
RPACG25490.1PHOSPHOHEXOMUTASE FAMILY MEMBER
RPACG25491.1PHOSPHOHEXOMUTASE FAMILY MEMBER
RPACG25492.1SERINE/THREONINE-PROTEIN KINASE
RPACG25493.1
RPACG25494.1
RPACG25495.1
RPACG25496.1SR-RELATED CTD ASSOCIATED FACTOR 6
RPACG25497.1
RPACG25498.1
RPACG25499.1TOLL-LIKE RECEPTOR
RPACG25500.1
RPACG25501.1
RPACG25502.1
RPACG25503.1METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED
RPACG25503.2
RPACG25504.1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
RPACG25504.2TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
RPACG25504.3
RPACG25504.4
RPACG25505.1
RPACG25506.1
RPACG25507.1
RPACG25508.1
RPACG25509.1
RPACG25510.1
RPACG25510.2
RPACG25511.1
RPACG25511.2
RPACG25512.1
RPACG25513.1
RPACG25514.1
RPACG25515.1
RPACG25516.1
RPACG25517.1
RPACG25518.1
RPACG25519.1
RPACG25520.1
RPACG25521.1
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