Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2160685.1 | SERINE PROTEASE INHIBITOR, SERPIN |
| KAK2160686.1 | SERINE PROTEASE INHIBITOR, SERPIN |
| KAK2160687.1 | SERINE PROTEASE INHIBITOR, SERPIN |
| KAK2160688.1 | TOL-PAL SYSTEM PROTEIN TOLA |
| KAK2160689.1 | |
| KAK2160690.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2160683.1 | FMRFAMIDE RECEPTOR-RELATED |
| KAK2160679.1 | 34 KDA TRANSCRIPTIONAL CO-ACTIVATOR-RELATED |
| KAK2160680.1 | |
| KAK2160681.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2160682.1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
| KAK2160640.1 | |
| KAK2160641.1 | NEUROPEPTIDE Y RECEPTOR |
| KAK2160642.1 | - |
| KAK2160635.1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| KAK2160636.1 | GUANYLYL CYCLASE |
| KAK2160637.1 | GUANYLYL CYCLASE |
| KAK2160638.1 | |
| KAK2160639.1 | NATRIURETIC PEPTIDE RECEPTOR 3-RELATED |
| KAK2160630.1 | |
| KAK2160631.1 | |
| KAK2160632.1 | BONUS, ISOFORM C-RELATED |
| KAK2160633.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7 |
| KAK2160634.1 | PHOSPHOETHANOLAMINE METHYLTRANSFERASE |
| KAK2160594.1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| KAK2160595.1 | |
| KAK2160596.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2160597.1 | |
| KAK2160598.1 | |
| KAK2160599.1 | RFX TRANSCRIPTION FACTOR FAMILY |
| KAK2160589.1 | |
| KAK2160590.1 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 |
| KAK2160591.1 | H2.0-LIKE HOMEOBOX PROTEIN |
| KAK2160592.1 | |
| KAK2160593.1 | |
| KAK2160588.1 | |
| KAK2160551.1 | METHYLTRANSFERASE TYPE 11 |
| KAK2160552.1 | ENDOSULFINE |
| KAK2160553.1 | PHOSPHATIDYLINOSITOL GLYCAN |
| KAK2160554.1 | ADP-DEPENDENT GLUCOKINASE |
| KAK2160555.1 | METAXIN RELATED |
| KAK2160556.1 | |
| KAK2160557.1 | |
| KAK2160549.1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
| KAK2160550.1 | |
| KAK2160546.1 | |
| KAK2160547.1 | NF-E2 INDUCIBLE PROTEIN |
| KAK2160548.1 | RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS |
| KAK2160513.1 | |
| KAK2160514.1 | SOLUTE CARRIER FAMILY 22 MEMBER |
