About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Ridgeia (Genus); Ridgeia piscesae (Species)

Original Name

Ridgeia piscesae Jones, 1985

Key Reference Paper

1. Jones M L. On the Vestimentifera, new phylum: six new species, and other taxa, from hydrothermal vents and elsewhere[J]. Bull Biol Soc Wash, 1985, 6: 117. (Jones et al., 1985)
2. Southward E C, Tunnicliffe V, Black M. Revision of the species of Ridgeia from northeast Pacific hydrothermal vents, with a redescription of Ridgeia piscesae Jones (Pogonophora: Obturata= Vestimentifera)[J]. Canadian Journal of zoology, 1995, 73(2): 282-295. (Southward et al., 1995)

Distribution

Shepherd's Vent, Axial Seamount, Juande Fuca Ridge. Hydrothermal vents of Juan de Fuca Ridgeand northern Gorda Ridge


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent1,780-2,227the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894.00 365.441-31,703

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294

Gene Information

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Gene IDDescription
KAK2183597.1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
KAK2183598.1-
KAK2183599.1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
KAK2183600.1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
KAK2183601.1MITOCHONDRIAL INNER MEMBRANE PROTEASE
KAK2183602.1NITROGEN PERMEASE REGULATOR 2/TUMOR SUPPRESSOR CANDIDATE 4
KAK2183603.1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
KAK2183604.1GLYCOPROTEIN IB BETA
KAK2183605.1LEUCINE RICH REPEAT FAMILY PROTEIN
KAK2183606.1SYNAPTIC ADHESION-LIKE MOLECULE SALM
KAK2183607.1RHO FAMILY GTPASE
KAK2183608.1-
KAK2183609.1THYROTROPH EMBRYONIC FACTOR RELATED
KAK2183610.1NUMOD3 MOTIF FAMILY PROTEIN, EXPRESSED
KAK2183611.1MYOSUPPRESSIN RECEPTOR 1, ISOFORM B-RELATED
KAK2183612.1GUANYL-NUCLEOTIDE EXCHANGE FACTOR
KAK2183613.1-
KAK2183614.1TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
KAK2183615.1WD40 REPEAT PROTEIN SWD2
KAK2183616.1PROTEIN PHOSPHATASE 2C
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