About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG22386.1PROTEIN CBG03580
RPACG22387.1
RPACG22388.1
RPACG22389.1
RPACG22389.2
RPACG22390.1
RPACG22391.1
RPACG22392.1
RPACG22393.1
RPACG22394.1
RPACG22395.1
RPACG22396.1
RPACG22397.1
RPACG22398.1
RPACG22399.1
RPACG22400.1
RPACG22400.2
RPACG22401.1
RPACG22402.1
RPACG22403.1
RPACG22403.2
RPACG22404.1
RPACG22405.1
RPACG22406.1
RPACG22407.1ATILLA, ISOFORM B-RELATED-RELATED
RPACG22408.1
RPACG22409.1
RPACG22410.1
RPACG22411.1SEMAPHORIN
RPACG22412.1
RPACG22413.1TROPONIN C-AKIN-1 PROTEIN
RPACG22414.1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
RPACG22415.1HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN
RPACG22416.1HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN
RPACG22417.1FAST LEU-RICH DOMAIN-CONTAINING
RPACG22418.1CONDENSIN-2 COMPLEX SUBUNIT G2
RPACG22419.1SMARCE1 REGULATOR OF CHROMATIN
RPACG22420.1DNA REPLICATION REGULATOR DPB11-RELATED
RPACG22421.1
RPACG22421.2
RPACG22421.3
RPACG22421.4
RPACG22422.1PYRUVATE DEHYDROGENASE KINASE
RPACG22423.1PERIAXIN/AHNAK
RPACG22424.1
RPACG22425.1
RPACG22426.1PROTEIN CDV3 HOMOLOG
RPACG22427.1
RPACG22428.1ANKYRIN REPEAT FAMILY PROTEIN
RPACG22429.1
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