About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG22256.2
RPACG22256.3
RPACG22257.1ORGANIC ANION TRANSPORTER
RPACG22257.2
RPACG22258.1
RPACG22258.2
RPACG22258.3
RPACG22259.1
RPACG22260.1EARLY GAMETOCYTE ENRICHED PHOSPHOPROTEIN EGXP
RPACG22261.1ORGANIC ANION TRANSPORTER
RPACG22262.1CADHERIN DOMAIN-CONTAINING PROTEIN
RPACG22263.1ORGANIC ANION TRANSPORTER
RPACG22263.2
RPACG22264.1
RPACG22265.1IONOTROPIC GLUTAMATE RECEPTOR
RPACG22266.1
RPACG22266.2
RPACG22267.1
RPACG22268.1
RPACG22269.1
RPACG22270.1
RPACG22271.1
RPACG22272.1
RPACG22273.1
RPACG22274.1
RPACG22275.1
RPACG22276.1ZINC FINGER PROTEIN
RPACG22277.1
RPACG22278.139S RIBOSOMAL PROTEIN L53, MITOCHONDRIAL
RPACG22279.1SERINE/THREONINE-PROTEIN KINASE DOA-RELATED
RPACG22279.2
RPACG22280.1TETRASPANIN
RPACG22281.1
RPACG22281.2
RPACG22282.1
RPACG22283.1
RPACG22284.1CALCIUM BINDING PROTEIN
RPACG22285.1
RPACG22286.1SURFACE ANTIGEN BSPA-LIKE-RELATED
RPACG22287.1
RPACG22288.1
RPACG22289.1SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED
RPACG22290.1RAB FAMILY
RPACG22291.1CXC DOMAIN-CONTAINING PROTEIN-RELATED
RPACG22292.1NOTCH LIGAND FAMILY MEMBER
RPACG22293.1CRUMBS FAMILY MEMBER
RPACG22294.1
RPACG22295.1CRUMBS FAMILY MEMBER
RPACG22296.1CALCIUM-BINDING PROTEIN 8-RELATED
RPACG22297.1
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