About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG21961.1
RPACG21962.1INNER CENTROMERE PROTEIN
RPACG21963.1MITOCHONDRIAL ATP SYNTHASE B CHAIN
RPACG21964.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
RPACG21965.1BONUS, ISOFORM C-RELATED
RPACG21966.1
RPACG21967.1
RPACG21968.1
RPACG21969.1UNCHARACTERIZED
RPACG21970.1DIACYLGLYCEROL LIPASE HOMOLOG-RELATED
RPACG21971.1
RPACG21972.1ACETYLGLUCOSAMINYLTRANSFERASE
RPACG21973.1CGI-41 METHYLTRANSFERASE
RPACG21974.1BLOC-1-RELATED COMPLEX SUBUNIT 5
RPACG21975.1ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 3
RPACG21976.1RAS-LIKE FAMILY MEMBER 11
RPACG21977.1PROTEIN CIP2A
RPACG21978.1COILED-COIL DOMAIN-CONTAINING PROTEIN 181
RPACG21979.1THIOREDOXIN PEROXIDASE
RPACG21980.1
RPACG21981.1
RPACG21982.1
RPACG21983.1
RPACG21984.1SENTRIN-SPECIFIC PROTEASE
RPACG21985.1
RPACG21986.1GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
RPACG21987.1
RPACG21988.1
RPACG21989.1
RPACG21990.1
RPACG21991.1
RPACG21992.1
RPACG21992.2
RPACG21993.1
RPACG21994.1
RPACG21995.1
RPACG21996.1
RPACG21996.2
RPACG21997.1TRANSAMIDASE
RPACG21998.1
RPACG21999.1
RPACG22000.1
RPACG22001.1
RPACG22002.1
RPACG22003.1TRANSAMIDASE
RPACG22004.1
RPACG22005.1
RPACG22006.1UBX DOMAIN CONTAINING PROTEIN
RPACG22007.1
RPACG22008.1
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