About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

<< First 484 485 486 487 488 489 490 491 492 493 Forward> Last>>        604 pages in total

Gene IDDescription
RPACG21740.1PRE-MRNA-PROCESSING FACTOR 17
RPACG21741.1WASP-1
RPACG21742.1MALIC ENZYME-RELATED
RPACG21742.2
RPACG21743.1MALIC ENZYME-RELATED
RPACG21744.1CALPONIN
RPACG21745.1
RPACG21746.1
RPACG21747.1
RPACG21748.1
RPACG21749.1
RPACG21750.1
RPACG21751.1
RPACG21752.1
RPACG21753.1
RPACG21754.1
RPACG21755.1
RPACG21756.1
RPACG21757.1
RPACG21758.1
RPACG21759.1
RPACG21759.2
RPACG21760.1
RPACG21761.1DESMOGLEIN FAMILY MEMBER
RPACG21762.1CALPONIN
RPACG21763.1-
RPACG21764.1DESMOGLEIN FAMILY MEMBER
RPACG21765.1
RPACG21766.1CALPONIN
RPACG21767.1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
RPACG21768.1
RPACG21769.1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
RPACG21770.1
RPACG21771.1
RPACG21772.1GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
RPACG21773.1ZINC FINGER AND SCAN DOMAIN-CONTAINING
RPACG21774.1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
RPACG21775.1NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4
RPACG21775.2
RPACG21776.1UNCHARACTERIZED
RPACG21777.1
RPACG21778.1
RPACG21779.1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
RPACG21780.1
RPACG21781.1-
RPACG21782.1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
RPACG21783.1
RPACG21784.1-
RPACG21785.1
RPACG21786.1E3 UBIQUITIN-PROTEIN LIGASE KCMF1
TOP