About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG21509.1
RPACG21510.1
RPACG21511.1
RPACG21512.1
RPACG21513.1
RPACG21514.1
RPACG21515.1PROTEIN CBG17025
RPACG21516.1
RPACG21517.1
RPACG21518.1
RPACG21519.1
RPACG21520.1
RPACG21521.1PROTEIN CBG17025
RPACG21522.1
RPACG21523.1
RPACG21524.1
RPACG21525.1
RPACG21526.1
RPACG21527.1
RPACG21528.1
RPACG21529.1
RPACG21530.1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
RPACG21531.1C5ORF35
RPACG21532.1SNF2/RAD54 HELICASE FAMILY
RPACG21533.1
RPACG21534.1CENTROSOMAL PROTEIN POC5
RPACG21535.1
RPACG21536.1
RPACG21537.1
RPACG21538.1UNCHARACTERIZED
RPACG21539.1NUCLEAR HORMONE RECEPTOR HR3-RELATED
RPACG21540.1
RPACG21541.1SEC14 RELATED PROTEIN
RPACG21542.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
RPACG21543.1
RPACG21543.2
RPACG21544.1
RPACG21545.1
RPACG21545.2
RPACG21546.1
RPACG21547.1
RPACG21548.1
RPACG21549.1
RPACG21550.1UNCHARACTERIZED
RPACG21551.1
RPACG21552.1OXYSTEROL-BINDING PROTEIN-RELATED
RPACG21552.2OXYSTEROL-BINDING PROTEIN-RELATED
RPACG21553.1DEP DOMAIN-CONTAINING
RPACG21554.1PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1
RPACG21554.2
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