About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG20748.1BOMBESIN RECEPTOR-ACTIVATED PROTEIN C6ORF89
RPACG20749.1SUPPRESSOR OF TY 4
RPACG20750.1SPERMATOGENESIS-ASSOCIATED PROTEIN 22
RPACG20750.2
RPACG20751.1
RPACG20752.1TNF RECEPTOR ASSOCIATED FACTOR
RPACG20753.1MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE
RPACG20754.1LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN
RPACG20755.1ZINC METALLOPROTEINASE-RELATED
RPACG20756.1YIPPEE DOMAIN-CONTAINING PROTEIN
RPACG20757.1
RPACG20758.1
RPACG20758.2
RPACG20759.1
RPACG20760.1
RPACG20761.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG20762.1
RPACG20763.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG20764.1CELL DIVISION CYCLE 16,23,27
RPACG20765.1
RPACG20766.1
RPACG20767.1
RPACG20768.1
RPACG20769.1
RPACG20770.1
RPACG20771.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG20772.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG20773.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG20774.1
RPACG20774.2
RPACG20775.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG20776.1
RPACG20777.1
RPACG20778.1
RPACG20778.2
RPACG20779.1
RPACG20780.1
RPACG20781.1
RPACG20782.1
RPACG20783.1
RPACG20783.2
RPACG20783.3
RPACG20784.1
RPACG20785.1
RPACG20786.1
RPACG20787.1
RPACG20788.1
RPACG20789.1
RPACG20790.1
RPACG20791.1
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