About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG20574.1
RPACG20575.1DUF853 DOMAIN-CONTAINING PROTEIN
RPACG20576.1AMINO ACID TRANSPORTER
RPACG20577.1LD33804P
RPACG20578.1
RPACG20579.1MUCIN-17
RPACG20580.1
RPACG20581.1
RPACG20582.1STG PROTEIN
RPACG20582.2
RPACG20583.1-
RPACG20584.1
RPACG20584.2
RPACG20584.3
RPACG20585.1FMRFAMIDE RECEPTOR-RELATED
RPACG20586.1
RPACG20587.1
RPACG20588.1
RPACG20589.1
RPACG20590.1
RPACG20591.1
RPACG20592.1MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM10
RPACG20592.2
RPACG20593.1TRAF-TYPE ZINC FINGER PROTEIN-RELATED
RPACG20594.1CALCIUM-TRANSPORTING ATPASE
RPACG20595.1UNCHARACTERIZED
RPACG20596.1OPSIN
RPACG20597.1CARBOHYDRATE BINDING DOMAIN CONTAINING PROTEIN
RPACG20598.1
RPACG20599.1
RPACG20599.2
RPACG20600.1SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 2
RPACG20601.1POLYKETIDE SYNTHASE-RELATED
RPACG20602.1
RPACG20603.1
RPACG20604.1
RPACG20605.1
RPACG20606.1
RPACG20607.1
RPACG20608.1
RPACG20609.1ANTIGEN BSP, PUTATIVE-RELATED
RPACG20609.2
RPACG20610.1UNCHARACTERIZED
RPACG20611.1UNCHARACTERIZED
RPACG20611.2
RPACG20611.3
RPACG20612.1UNCHARACTERIZED
RPACG20613.1UNCHARACTERIZED
RPACG20614.1
RPACG20615.1THYLAKOID LUMENAL 15 KDA PROTEIN 1, CHLOROPLASTIC
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