About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s015.g0167.t1DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX
Lsat_s015.g0168.t1RNA 3' TERMINAL PHOSPHATE CYCLASE
Lsat_s015.g0169.t1GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45
Lsat_s015.g0170.t1-
Lsat_s015.g0171.t1-
Lsat_s015.g0172.t1GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT
Lsat_s015.g0173.t1-
Lsat_s015.g0174.t1UNCHARACTERIZED
Lsat_s015.g0175.t1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
Lsat_s015.g0176.t1-
Lsat_s015.g0177.t1-
Lsat_s015.g0178.t1-
Lsat_s015.g0179.t1UNCHARACTERIZED
Lsat_s015.g0180.t1GLYCOSYL TRANSFERASE-RELATED
Lsat_s015.g0181.t1CT120 PROTEIN
Lsat_s015.g0182.t1ANTERIOR GRADIENT PROTEIN-RELATED
Lsat_s015.g0183.t1ATP-DEPENDENT RNA AND DNA HELICASE
Lsat_s015.g0184.t1SNF2/RAD54 FAMILY MEMBER
Lsat_s015.g0185.t1E3 UBIQUITIN-PROTEIN LIGASE TOPORS
Lsat_s015.g0186.t1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7
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