Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2171603.1 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
| KAK2171604.1 | ZINC FINGER PROTEIN |
| KAK2171605.1 | |
| KAK2171606.1 | |
| KAK2171607.1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| KAK2171589.1 | - |
| KAK2171590.1 | |
| KAK2171591.1 | |
| KAK2171592.1 | RAN BINDING PROTEIN 9-RELATED |
| KAK2171593.1 | |
| KAK2171594.1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| KAK2171584.1 | UNCHARACTERIZED |
| KAK2171585.1 | DOCKING PROTEIN RELATED |
| KAK2171586.1 | |
| KAK2171587.1 | |
| KAK2171588.1 | |
| KAK2171566.1 | |
| KAK2171567.1 | SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING |
| KAK2171568.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| KAK2171569.1 | NOTCH LIGAND FAMILY MEMBER |
| KAK2171570.1 | VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN |
| KAK2171571.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| KAK2171572.1 | OVOCHYMASE-RELATED |
| KAK2171573.1 | - |
| KAK2171574.1 | COLLAGEN ALPHA |
| KAK2171575.1 | HISTONE H1 |
| KAK2171576.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 |
| KAK2171577.1 | ZINC FINGER PROTEIN 598 |
| KAK2171578.1 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE |
| KAK2171579.1 | 3BP-1 RELATED RHOGAP |
| KAK2171580.1 | EXOSOME COMPLEX COMPONENT |
| KAK2171581.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| KAK2171582.1 | PROTEIN CBG26694 |
| KAK2171583.1 | |
| KAK2171561.1 | |
| KAK2171562.1 | UNCHARACTERIZED |
| KAK2171563.1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| KAK2171564.1 | ARGININE OR CREATINE KINASE |
| KAK2171565.1 | EXPRESSED PROTEIN |
| KAK2171545.1 | |
| KAK2171546.1 | |
| KAK2171547.1 | |
| KAK2171548.1 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| KAK2171549.1 | |
| KAK2171550.1 | |
| KAK2171551.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| KAK2171552.1 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN |
| KAK2171553.1 | |
| KAK2171554.1 | |
| KAK2171555.1 | PERILIPIN |
