Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2171692.1 | CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 |
| KAK2171693.1 | |
| KAK2171694.1 | |
| KAK2171695.1 | |
| KAK2171696.1 | SIMILAR TO PREFERENTIALLY EXPRESSED ANTIGEN IN MELANOMA-LIKE 3 |
| KAK2171697.1 | |
| KAK2171698.1 | |
| KAK2171699.1 | CHITIN SYNTHASE |
| KAK2171700.1 | |
| KAK2171701.1 | |
| KAK2171686.1 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
| KAK2171687.1 | |
| KAK2171688.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S33 |
| KAK2171689.1 | GUANYLATE KINASE-RELATED |
| KAK2171681.1 | |
| KAK2171682.1 | PROTEIN CBG26694 |
| KAK2171683.1 | |
| KAK2171684.1 | |
| KAK2171685.1 | |
| KAK2171673.1 | E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED |
| KAK2171674.1 | BONUS, ISOFORM C-RELATED |
| KAK2171675.1 | L-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL |
| KAK2171676.1 | |
| KAK2171677.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| KAK2171678.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL |
| KAK2171679.1 | DESUMOYLATING ISOPEPTIDASE |
| KAK2171680.1 | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT H |
| KAK2171668.1 | MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED |
| KAK2171669.1 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
| KAK2171670.1 | METHYLTRANSFERASE-LIKE PROTEIN 24 |
| KAK2171671.1 | URIDINE KINASE |
| KAK2171672.1 | - |
| KAK2171659.1 | |
| KAK2171660.1 | MUCIN 4-RELATED |
| KAK2171661.1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
| KAK2171662.1 | |
| KAK2171663.1 | |
| KAK2171664.1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
| KAK2171665.1 | FUN14 DOMAIN CONTAINING |
| KAK2171666.1 | LYSINE-SPECIFIC DEMETHYLASE |
| KAK2171667.1 | |
| KAK2171648.1 | |
| KAK2171649.1 | |
| KAK2171650.1 | BONUS, ISOFORM C-RELATED |
| KAK2171651.1 | |
| KAK2171652.1 | |
| KAK2171653.1 | EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN |
| KAK2171654.1 | SYNTROPHIN |
| KAK2171655.1 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
| KAK2171656.1 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
