Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2172255.1 | UNCHARACTERIZED |
| KAK2172245.1 | AP-5 COMPLEX SUBUNIT BETA-1 |
| KAK2172246.1 | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED |
| KAK2172247.1 | SLD5 PROTEIN |
| KAK2172248.1 | |
| KAK2172232.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| KAK2172233.1 | O-ACYLTRANSFERASE |
| KAK2172234.1 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
| KAK2172235.1 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
| KAK2172236.1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
| KAK2172237.1 | |
| KAK2172238.1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
| KAK2172239.1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
| KAK2172240.1 | NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN |
| KAK2172241.1 | UNCHARACTERIZED |
| KAK2172242.1 | ATP SYNTHASE F CHAIN, MITOCHONDRIAL-RELATED |
| KAK2172243.1 | AMINO ACID TRANSPORTER |
| KAK2172244.1 | |
| KAK2172224.1 | MATRIX METALLOPROTEINASE |
| KAK2172225.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2172226.1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
| KAK2172227.1 | STANNIOCALCIN |
| KAK2172228.1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| KAK2172229.1 | |
| KAK2172230.1 | |
| KAK2172231.1 | |
| KAK2172217.1 | |
| KAK2172218.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| KAK2172219.1 | MYOSIN VII, XV |
| KAK2172220.1 | |
| KAK2172221.1 | T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED |
| KAK2172222.1 | |
| KAK2172223.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2172215.1 | |
| KAK2172216.1 | |
| KAK2172208.1 | |
| KAK2172209.1 | FORKHEAD BOX PROTEIN |
| KAK2172210.1 | ARGININE OR CREATINE KINASE |
| KAK2172211.1 | SPERM-ASSOCIATED ANTIGEN 8 |
| KAK2172212.1 | TYROSINE-PROTEIN KINASE |
| KAK2172213.1 | LUPUS LA PROTEIN-RELATED |
| KAK2172214.1 | FRATAXIN |
| KAK2172196.1 | |
| KAK2172197.1 | |
| KAK2172198.1 | |
| KAK2172199.1 | |
| KAK2172200.1 | NEPHRIN |
| KAK2172201.1 | |
| KAK2172202.1 | |
| KAK2172203.1 | PROTEIN CBG26694 |
