Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2172290.1 | |
| KAK2172291.1 | TSEC1-RELATED |
| KAK2172292.1 | RFX TRANSCRIPTION FACTOR FAMILY |
| KAK2172293.1 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| KAK2172294.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2172295.1 | |
| KAK2172296.1 | |
| KAK2172297.1 | PROTEIN CBG26694 |
| KAK2172298.1 | PROTEIN CBG26694 |
| KAK2172299.1 | ZINC FINGER PROTEIN |
| KAK2172300.1 | METALLOPROTEASE TIKI |
| KAK2172301.1 | |
| KAK2172302.1 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM |
| KAK2172265.1 | FIBROIN HEAVY CHAIN FIB-H LIKE PROTEIN |
| KAK2172266.1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| KAK2172267.1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| KAK2172268.1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| KAK2172269.1 | IONOTROPIC GLUTAMATE RECEPTOR |
| KAK2172270.1 | IONOTROPIC GLUTAMATE RECEPTOR |
| KAK2172271.1 | |
| KAK2172272.1 | |
| KAK2172273.1 | |
| KAK2172274.1 | |
| KAK2172275.1 | |
| KAK2172276.1 | |
| KAK2172277.1 | BUCENTAUR RELATED |
| KAK2172278.1 | POLY ADP-RIBOSE POLYMERASE FAMILY, MEMBER PARP |
| KAK2172279.1 | POLY ADP-RIBOSE POLYMERASE FAMILY, MEMBER PARP |
| KAK2172280.1 | BTB/POZ DOMAIN-CONTAINING |
| KAK2172281.1 | CYTOCHROME C OXIDASE POLYPEPTIDE |
| KAK2172282.1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| KAK2172283.1 | HELIX LOOP HELIX PROTEIN 21-RELATED |
| KAK2172284.1 | ZINC/IRON TRANSPORTER |
| KAK2172285.1 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
| KAK2172286.1 | COLLAGEN ALPHA |
| KAK2172256.1 | |
| KAK2172257.1 | VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE |
| KAK2172258.1 | |
| KAK2172259.1 | |
| KAK2172260.1 | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE |
| KAK2172261.1 | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 6.4 KD PROTEIN |
| KAK2172262.1 | |
| KAK2172263.1 | |
| KAK2172264.1 | |
| KAK2172249.1 | |
| KAK2172250.1 | |
| KAK2172251.1 | ANNEXIN |
| KAK2172252.1 | ANNEXIN |
| KAK2172253.1 | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED |
| KAK2172254.1 | UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED |
