Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2173050.1 | |
| KAK2173051.1 | |
| KAK2173052.1 | |
| KAK2173053.1 | |
| KAK2173054.1 | |
| KAK2173055.1 | |
| KAK2173056.1 | - |
| KAK2173057.1 | CARBOHYDRATE SULFOTRANSFERASE |
| KAK2173058.1 | |
| KAK2173059.1 | |
| KAK2173035.1 | |
| KAK2173036.1 | PURPLE ACID PHOSPHATASE |
| KAK2173037.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2173038.1 | PROTEIN CBG26694 |
| KAK2173039.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2173021.1 | |
| KAK2173022.1 | |
| KAK2173023.1 | PEROXISOMAL MEMBRANE PROTEIN 4 |
| KAK2173024.1 | NATURAL KILLER CELL-SPECIFIC ANTIGEN KLIP1 |
| KAK2173025.1 | UNCHARACTERIZED PROTEIN KIAA2013 |
| KAK2173026.1 | BUCENTAUR RELATED |
| KAK2173027.1 | |
| KAK2173028.1 | FI23527P1 |
| KAK2173029.1 | CRUMBS FAMILY MEMBER |
| KAK2173030.1 | |
| KAK2173031.1 | |
| KAK2173032.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 |
| KAK2173033.1 | FI23527P1 |
| KAK2173034.1 | - |
| KAK2173009.1 | COLLAGEN ALPHA |
| KAK2173010.1 | NUCLEOSIDE DIPHOSPHATE KINASE 7 |
| KAK2173011.1 | BASIC LEUCINE ZIPPER NUCLEAR FACTOR 1 BLZF1 PROTEIN |
| KAK2173012.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2173013.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2173014.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2173015.1 | FTP DOMAIN-CONTAINING PROTEIN |
| KAK2173016.1 | - |
| KAK2173017.1 | |
| KAK2173018.1 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| KAK2173019.1 | |
| KAK2173020.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2172998.1 | |
| KAK2172999.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2173000.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| KAK2173001.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2173002.1 | |
| KAK2173003.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| KAK2173004.1 | |
| KAK2173005.1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
| KAK2173006.1 | MUCIN 4-RELATED |
