Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2173159.1 | PROGRAMMED CELL DEATH 4 |
| KAK2173160.1 | |
| KAK2173161.1 | MYOSIN LIGHT CHAIN 1, 3 |
| KAK2173162.1 | MYOSIN LIGHT CHAIN 1, 3 |
| KAK2173142.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S23 |
| KAK2173143.1 | FOIE GRAS |
| KAK2173144.1 | BREAST CARCINOMA AMPLIFIED SEQUENCE 3 |
| KAK2173145.1 | MYOSIN |
| KAK2173135.1 | |
| KAK2173136.1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| KAK2173137.1 | - |
| KAK2173138.1 | |
| KAK2173139.1 | - |
| KAK2173140.1 | NEUROPEPTIDE Y RECEPTOR |
| KAK2173141.1 | G-PROTEIN COUPLED RECEPTOR |
| KAK2173119.1 | |
| KAK2173120.1 | |
| KAK2173121.1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| KAK2173122.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT |
| KAK2173123.1 | |
| KAK2173124.1 | HISTONE H3 |
| KAK2173125.1 | HISTONE H2B |
| KAK2173126.1 | HISTONE H2A |
| KAK2173127.1 | HISTONE H3 |
| KAK2173128.1 | HISTONE H4 |
| KAK2173129.1 | HISTONE H2B |
| KAK2173130.1 | HISTONE H2A |
| KAK2173131.1 | HISTONE H3 |
| KAK2173132.1 | MULTIDRUG RESISTANCE PROTEIN |
| KAK2173133.1 | |
| KAK2173134.1 | |
| KAK2173106.1 | |
| KAK2173107.1 | |
| KAK2173108.1 | |
| KAK2173109.1 | |
| KAK2173110.1 | |
| KAK2173111.1 | |
| KAK2173112.1 | CRUMBS FAMILY MEMBER |
| KAK2173113.1 | |
| KAK2173114.1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| KAK2173115.1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| KAK2173116.1 | 3-KETO-STEROID REDUCTASE |
| KAK2173117.1 | YIPPEE DOMAIN-CONTAINING PROTEIN |
| KAK2173118.1 | REGULATOR OF MICROTUBULE DYNAMICS PROTEIN |
| KAK2173096.1 | |
| KAK2173097.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| KAK2173098.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| KAK2173099.1 | GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE |
| KAK2173100.1 | DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER |
| KAK2173101.1 |
