Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2174783.1 | |
| KAK2174784.1 | |
| KAK2174785.1 | |
| KAK2174786.1 | SEC3/SYNTAXIN-RELATED |
| KAK2174787.1 | HISTIDYL-TRNA SYNTHETASE |
| KAK2174788.1 | RING BOX |
| KAK2174789.1 | SULFURTRANSFERASE-RELATED |
| KAK2174790.1 | SULFURTRANSFERASE-RELATED |
| KAK2174791.1 | |
| KAK2174792.1 | |
| KAK2174793.1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| KAK2174794.1 | ATP-DEPENDENT RNA AND DNA HELICASE |
| KAK2174795.1 | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C |
| KAK2174796.1 | COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER |
| KAK2174797.1 | SPHINGOSINE KINASE |
| KAK2174798.1 | UBIQUITIN-PROTEIN LIGASE E3C |
| KAK2174751.1 | |
| KAK2174752.1 | |
| KAK2174753.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| KAK2174754.1 | |
| KAK2174755.1 | LIG_CHAN-GLU_BD DOMAIN-CONTAINING PROTEIN |
| KAK2174756.1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| KAK2174757.1 | LD33804P |
| KAK2174758.1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| KAK2174759.1 | |
| KAK2174760.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2174761.1 | OS01G0253100 PROTEIN |
| KAK2174762.1 | U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2 |
| KAK2174763.1 | |
| KAK2174764.1 | |
| KAK2174765.1 | UNCHARACTERIZED |
| KAK2174766.1 | |
| KAK2174767.1 | PROPERDIN |
| KAK2174768.1 | PROPERDIN |
| KAK2174769.1 | UNCHARACTERIZED |
| KAK2174770.1 | |
| KAK2174771.1 | |
| KAK2174772.1 | HMG DOMAIN-CONTAINING PROTEIN 4 |
| KAK2174773.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2174774.1 | |
| KAK2174775.1 | CRUMBS FAMILY MEMBER |
| KAK2174776.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2174777.1 | |
| KAK2174778.1 | |
| KAK2174779.1 | |
| KAK2174780.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| KAK2174781.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| KAK2174782.1 | |
| KAK2174742.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2174743.1 |
