About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG16974.1
RPACG16975.1
RPACG16976.1
RPACG16977.1
RPACG16978.1
RPACG16979.1AAA-FAMILY ATPASE
RPACG16980.1ANKYRIN REPEAT AND MYND DOMAIN PROTEIN 1
RPACG16981.1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
RPACG16982.1MYOSIN LIGHT CHAIN 1, 3
RPACG16983.1
RPACG16984.1
RPACG16985.1
RPACG16986.1
RPACG16987.1
RPACG16988.1
RPACG16989.1
RPACG16990.1
RPACG16991.1
RPACG16992.1
RPACG16993.1
RPACG16994.1
RPACG16995.1THAP4 PROTEIN
RPACG16995.2
RPACG16996.1CYSTEINE PROTEASE ATG4
RPACG16997.1CYSTEINE PROTEASE ATG4
RPACG16998.1SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20
RPACG16999.1RHOMBOID PROTEASE
RPACG16999.2
RPACG16999.3
RPACG17000.1FTP DOMAIN-CONTAINING PROTEIN
RPACG17001.1
RPACG17002.1DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED
RPACG17003.1
RPACG17004.1UNCHARACTERIZED
RPACG17005.1PROTEIN PHOSPHATASE 2C
RPACG17006.1
RPACG17007.1
RPACG17007.2
RPACG17008.1-
RPACG17009.1-
RPACG17010.1
RPACG17011.1ANTIGEN 332, DBL-LIKE PROTEIN-RELATED
RPACG17012.1
RPACG17013.1NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE
RPACG17013.2
RPACG17013.3
RPACG17014.1UNCHARACTERIZED
RPACG17015.1
RPACG17016.1PERIAXIN-LIKE
RPACG17016.2
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